— It appears we've gotten way ahead of ourselves without giving proper definitions. What exactly is knockout and why do we need it?
— Good question. A knockout is a genetic technique used to deactivate a specific gene. The animal remains healthy and generally feels well, but one specific gene is eliminated, hence the corresponding protein is also absent. It enables us to use those animals as excellent models for certain human diseases and to test potential therapy techniques on them. Currently, such modifications are performed using the CRISPR-Cas method, although previously other techniques were used, all with the aim of deactivating a specific gene.
— So, knockout is the tool. But what is the ultimate goal?
— I personally need knockouts for a very specific task — to identify new targets for pharmacological interventions to alter brain states. I use knockouts as models for various disorders and diseases, such as schizophrenia and drug addiction, which are associated with high levels of dopamine. I'm searching for medications that can influence that target in mice. If it proves effective in mice, then it can be tested on humans. There are various models available. I have rats that produce high levels of dopamine, and some lack serotonin. My primary focus now is on trace amines.
I refer to them as the cousins of dopamine, with which they have similar structure. They were discovered before norepinephrine and dopamine, but their functional role remained unclear.
The picture became somewhat clearer when their receptors, which belong to the GPCR class, were discovered. The discovery was made by Bob Lefkowitz in his lab at Duke University, earning him a Nobel Prize in 2012. Marc Caron was his first postdoc and later opened his own lab nearby, but essentially the two labs operated as one. Bob and Marc shared adjacent offices throughout their careers. I had the privilege of working closely with both of them and consider them both my mentors. Caron was particularly renowned for his work with dopamine receptors, which also belong to the GPCR class. He cloned two of the five known receptors, but unfortunately never received a Nobel Prize. So, they discovered the first receptor — the beta-2 adrenergic receptor, activated by adrenaline — and boldly stated in their Nature paper that there would be many more such receptors. But there turned out to be more than 800!!! They could never have imagined, not even in their wildest dreams, that there would be so many. As much as 4% of the genome turned out to be GPCRs. What it means is that we have a total of 20,000 genes, and over 800 of them are GPCRs, which play a significant role in our body's functioning.
For instance, histamine GPCRs, opioid receptors, adrenergic receptors, serotonin receptors, dopamine receptors, and so on — they are all in charge of transmitting the signal from outside the cell to the inside of the cell. It is a vast field of knowledge, and it is reflected in pharmacological areas as well, — up to 40% of all compounds used in clinical practice either activate (agonists) or block (antagonists) some of the mentioned receptors. For instance, all known antipsychotics (more than 40 at the time) block dopamine D2 receptors.
— Is that where we get back to trace amines?
— Precisely. There is a great deal of research being conducted in the wake of interest in that topic. Notably, new GPCRs for trace amines — the cousins of dopamine — have been discovered. They were classified as so-called orphan receptors because the chemicals that could activate them were unknown at that time. In 2001, when they were discovered, Marc and Bob essentially handed that topic over to me, and I've been working on it for more than 20 years now. As it turns out, humans have six subtypes of those receptors. I began studying them and started getting some very intriguing data. And since ligands are future drugs, I started collaborating with several companies. In 2007, I decided to move to Genoa, where the Italian equivalent of Skoltech, the Istituto Italiano di Tecnologia (IIT), had opened, and I took that topic with me. Meanwhile, Marc couldn't find anyone willing or capable of pursuing that topic, so I completely moved it to Italy. At IIT, I started a partnership with Hoffmann-La Roche from Switzerland, who provided us with grants for five or six years. During that period, we jointly published around 20–30 papers detailing TAAR1, the first of the six receptors. The company initiated clinical trials on a TAAR1 agonist to manage psychosis in schizophrenia. That project was a success, but it ended once they started clinical trials and no longer needed me. That's the way it works — scientists conduct only fundamental research. In our case, we demonstrated that it was a viable target for such therapy. From there on, it was the clinicians' job.
Meanwhile, I continued my research on other trace amine receptors. However, unexpectedly in 2007, just as I had relocated to Italy, an article by Nobel laureate Linda Buck was published in Nature. Structurally, they're all roughly similar, and that article claimed that the other five trace amine receptors, apart from TAAR1, were purely olfactory. Linda Buck made a bold statement that they had analyzed and found those receptors to be only present in the olfactory epithelium and not in the brain. By that time, I had already begun to study those receptors quite intensively and had knockouts ready for that purpose, so I strongly disagreed with her assertion. Yes, those are olfactory receptors responsible for instinctive smells, like the smell of organic decay or pheromones, or the mechanism by which a cat recognizes a mouse or an antelope recognizes a tiger. But what are those smells? I have an interesting story about it. My colleagues from Harvard gathered urine from 400 different zoo animals, both herbivores and carnivores, and discovered a high concentration of beta-phenylethylamine in the carnivores’ samples. Beta-phenylethylamine is a derivative of the amino acid phenylalanine. It is plentiful in meat, so those who consume meat have a lot of it. It is one of the best known trace amines. Generally, trace amines are produced through the decarboxylation of amino acids. In other words, we are all made up of 20 building blocks — amino acids — and if you remove the acid part from an amino acid, you get an amine, which is a trace amine. As a result of that amino acid decarboxylation process, there should be at least 20 trace amines. It can be either an endogenous process, using the body's own enzymes, or exogenous one, managed through bacteria. Those amines are particularly prevalent in foods produced by bacterial fermentation, such as wine, cheese, smoked meats, beer, and sausages. So we have decided to study what we consume. It seems like a fitting choice for Bashkir-Italian researchers!