— Are the findings of these experiments in model organisms partially applicable to humans?
— Yes, they are. Almost everything we learn from experiments on mice we can apply to humans, but not the other way around. It is impossible to study all aspects of human brain structure, function, and behavior on mice as humans have too many new genes acquired through evolution.
— Since you started doing research in this field, have there been any groundbreaking discoveries that made us completely rethink what we know about these processes?
— Yes, there have definitely been breakthroughs. When I first came into this field nearly 25 years ago we knew next to nothing about the molecular basics [of cerebral cortex development], although we knew a lot about brain anatomy on a descriptive level. We had an idea of how stem cells divide and what happens next, but we did not know the number of stem cell types, how they become neurons, and many other things as well. Science has made tremendous steps forward in the past 25 years. We know a whole lot more now. We have identified the key molecular players. We know which genes and proteins can make a cell stop dividing and become a neuron. These advancements were made possible, first of all, by extensive research and, second of all, by the arrival of new technologies.
It all began when we learned to read the human genome and many other genomes. This made it easier for geneticists to study numerous different things underlying cortical development. Then a range of technologies came on the scene enabling quick and targeted genome modification. One of them, CRISPR-Cas, has revolutionized our work over the past decade. With CRISPR-Cas, experiments involving gene activity manipulation take very little time: procedures that used to take 3 to 4 years to complete can now be performed in six months. Another major breakthrough came with the deep sequencing technology. We are now equipped to read the transcriptome, which is the genome part active in a specific cell, and it's quick and affordable.
There's been a breakthrough in neurobiology, specifically in the methods that enable the analysis of interneuronal connections. Now we can, for example, manipulate a mouse brain into such visibility that we can observe the interneuronal connections in 3D. This takes research to an entirely new level. We used to be able to see a two-dimensional image only. We would take the brain, make thin cross sections, and observe what was going on there. Whenever it was possible, it was hard work to process those sequential slices into a three-dimensional image. Now we can take a whole brain, illuminate it, and see all the myriads of interconnected neurons in different regions of the cortex and other parts of the brain.
— Can we now claim that we understand the human brain well, or is our understanding still in its infancy?
— If we take infancy as our starting point, I would say we are at 3rd or 4th grade level of elementary school. We have a good grasp of the basic principles of cortex development, but we don't see the full picture yet. A great deal of effort is required to unravel all the mutual interactions of the genes, or more precisely, interactions of products of genes. Things are further complicated by the fact that, when we study a molecular cascade, the thing at the top is the transcription factor. It is a protein that controls the activity of many genes. It has several hundred target genes whose protein products interact with each other and, in turn, trigger further cascades. We are yet to fully appreciate the complexity of those cascades. Our current methods aren't sophisticated enough to study those cascades in their entirety, rather than their individual components. We are equipped to manipulate 1-3 genes simultaneously, so we can study what happens when those genes are disrupted. But how all those cascades are connected with each other remains a mystery to us. The methods we possess to this day are largely descriptive. I would say our level is arithmetic and basic geometry, but we have yet to master advanced mathematics.